Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03842.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5890
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32


Found at i:4086 original size:81 final size:81

Alignment explanation


    Indices: 3951--4115  Score: 276
    Period size: 81  Copynumber: 2.0  Consensus size: 81

       3941 TGGCCTCCAA

                        *           *     *               *                  
       3951 CCTCTAAGCTTTTCAAATTTGACTTAGATCGTAGTTACGAATTGTGGAAATTTGAAAAGTCTCTT
          1 CCTCTAAGCTTTCCAAATTTGACTAAGATCATAGTTACGAATTGTGAAAATTTGAAAAGTCTCTT

                            
       4016 TCCTTTTGGATATGTT
         66 TCCTTTTGGATATGTT

                                                                             
       4032 CCTCTAAGCTTTCCAAATTTGACTAAGATCATAGTTACGAATTGTGAAAATTTGAAAAGTCTCTT
          1 CCTCTAAGCTTTCCAAATTTGACTAAGATCATAGTTACGAATTGTGAAAATTTGAAAAGTCTCTT

              *        *    
       4097 TCTTTTTGGATCTGTT
         66 TCCTTTTGGATATGTT

               
       4113 CCT
          1 CCT

       4116 ACTCCTCCAA


Statistics
Matches: 78,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  81   78  1.00

ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41


Consensus pattern (81 bp):   
CCTCTAAGCTTTCCAAATTTGACTAAGATCATAGTTACGAATTGTGAAAATTTGAAAAGTCTCTT
TCCTTTTGGATATGTT
Done.