Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03856.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 845

Length: 1409
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.40


Found at i:425 original size:17 final size:17

Alignment explanation


    Indices: 403--437  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        393 TTTTGTGATT

                             
        403 GTGACGACTTTTTCTTG
          1 GTGACGACTTTTTCTTG

                             
        420 GTGACGACTTTTTCTTG
          1 GTGACGACTTTTTCTTG

             
        437 G
          1 G

        438 ATTTGATTGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.11, C:0.17, G:0.26, T:0.46


Consensus pattern (17 bp):   
GTGACGACTTTTTCTTG
Done.