Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03875.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4705
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:4581 original size:18 final size:19

Alignment explanation


    Indices: 4545--4582  Score: 60
    Period size: 20  Copynumber: 2.0  Consensus size: 19

       4535 GATTCACTTC

                                
       4545 TCTTGTTAAAATTCCTTCAA
          1 TCTTGTTAAAATT-CTTCAA

                               
       4565 TCTTGTTAAAATT-TTCAA
          1 TCTTGTTAAAATTCTTCAA

       4583 AGACAAAAGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  18    5  0.28
  20   13  0.72

ACGTcount: A:0.32, C:0.16, G:0.05, T:0.47


Consensus pattern (19 bp):   
TCTTGTTAAAATTCTTCAA
Done.