Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03881.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4016
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30


Found at i:3616 original size:3 final size:3

Alignment explanation


    Indices: 3608--3636  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

       3598 CCGACCACCG

                                                  
       3608 TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
          1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TC

       3637 GAGCTCCACC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34


Consensus pattern (3 bp):   
TCC

Done.