Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03881.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4760
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31


Found at i:842 original size:2 final size:2

Alignment explanation


    Indices: 835--861  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

        825 GCTCTATTGC

                                                    
        835 AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT A

        862 CGACACAAGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:973 original size:17 final size:17

Alignment explanation


    Indices: 951--984  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        941 GATAGTTTTC

                             
        951 TTTGGAAGTAGTGTGTG
          1 TTTGGAAGTAGTGTGTG

                             
        968 TTTGGAAGTAGTGTGTG
          1 TTTGGAAGTAGTGTGTG

        985 CGTATGTAGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41


Consensus pattern (17 bp):   
TTTGGAAGTAGTGTGTG

Found at i:4360 original size:3 final size:3

Alignment explanation


    Indices: 4352--4380  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

       4342 CCGACCACCG

                                                  
       4352 TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
          1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TC

       4381 GAGCTCCACC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34


Consensus pattern (3 bp):   
TCC

Done.