Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03887.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3772
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27


Found at i:2487 original size:23 final size:23

Alignment explanation


    Indices: 2457--2501  Score: 90
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       2447 AAACCAGTAC

                                   
       2457 ATGGTGAAATACACGCCACCTCT
          1 ATGGTGAAATACACGCCACCTCT

                                  
       2480 ATGGTGAAATACACGCCACCTC
          1 ATGGTGAAATACACGCCACCTC

       2502 CATAGTGCAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20


Consensus pattern (23 bp):   
ATGGTGAAATACACGCCACCTCT
Done.