Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03889.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1471
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36


Found at i:1142 original size:37 final size:36

Alignment explanation


    Indices: 1084--1157  Score: 112
    Period size: 37  Copynumber: 2.0  Consensus size: 36

       1074 TGATTAGGGT

                         *  *                   
       1084 TAGGGTGGTTAGGGTATTGGGTATGGGTTAGTGGGC
          1 TAGGGTGGTTAGGCTAGTGGGTATGGGTTAGTGGGC

                *                                
       1120 TAGGTTGGTTTAGGCTAGTGGGTATGGGTTAGTGGGC
          1 TAGGGTGG-TTAGGCTAGTGGGTATGGGTTAGTGGGC

             
       1157 T
          1 T

       1158 TCTGAATTGG


Statistics
Matches: 34,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  36    7  0.21
  37   27  0.79

ACGTcount: A:0.14, C:0.04, G:0.47, T:0.35


Consensus pattern (36 bp):   
TAGGGTGGTTAGGCTAGTGGGTATGGGTTAGTGGGC
Done.