Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03895.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1948
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31


Found at i:510 original size:26 final size:26

Alignment explanation


    Indices: 481--533  Score: 72
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        471 TTTACAGTTT

                                       
        481 TACCCCTAGGAGATAAATT-ACCGAAA
          1 TACCCCTAGG-GATAAATTGACCGAAA

                       *          *   
        507 TACCCCTAGGGTTAAATTGACCTAAA
          1 TACCCCTAGGGATAAATTGACCGAAA

             
        533 T
          1 T

        534 GCATGTTTGA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  25    7  0.29
  26   17  0.71

ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25


Consensus pattern (26 bp):   
TACCCCTAGGGATAAATTGACCGAAA

Found at i:1026 original size:136 final size:137

Alignment explanation


    Indices: 781--1066  Score: 520
    Period size: 136  Copynumber: 2.1  Consensus size: 137

        771 GAGTAGTCTC

                                                                             
        781 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                *          * 
        846 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
        911 ACTGTTA
        131 ACTGTTA

                                    *                                        
        918 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
        982 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1047 ACTGTTA
        131 ACTGTTA

              **         
       1054 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1067 AGGCCCAATA


Statistics
Matches: 144,  Mismatches: 5, Indels: 1
        0.96            0.03        0.01

Matches are distributed among these distances:
 136  124  0.86
 137   20  0.14

ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Done.