Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01291.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6150
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:62 original size:42 final size:42

Alignment explanation


    Indices: 3--86  Score: 159
    Period size: 42  Copynumber: 2.0  Consensus size: 42

          1 GG

                                                      
          3 TTATGAAAATTTGAATAAGAATTTCCAGTATTCTCTCTTTCT
          1 TTATGAAAATTTGAATAAGAATTTCCAGTATTCTCTCTTTCT

                              *                       
         45 TTATGAAAATTTGAATAATAATTTCCAGTATTCTCTCTTTCT
          1 TTATGAAAATTTGAATAAGAATTTCCAGTATTCTCTCTTTCT

         87 CTTTTCTCTC


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   41  1.00

ACGTcount: A:0.31, C:0.14, G:0.08, T:0.46


Consensus pattern (42 bp):   
TTATGAAAATTTGAATAAGAATTTCCAGTATTCTCTCTTTCT
Done.