Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03918.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3368
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26


Found at i:37 original size:15 final size:15

Alignment explanation


    Indices: 14--53  Score: 53
    Period size: 15  Copynumber: 2.6  Consensus size: 15

          4 TCAGAATCTG

                        *   
         14 AGAAAAAAAAAGAAAA
          1 AGAAAAAAAAA-TAAA

                         * 
         30 AGAAAAAAAAATACA
          1 AGAAAAAAAAATAAA

                     
         45 AGAAAAAAA
          1 AGAAAAAAA

         54 TTCAATTTTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   11  0.50
  16   11  0.50

ACGTcount: A:0.85, C:0.03, G:0.10, T:0.03


Consensus pattern (15 bp):   
AGAAAAAAAAATAAA
Done.