Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03918.F17

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3324
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26


Found at i:23 original size:15 final size:15

Alignment explanation


    Indices: 1--39  Score: 51
    Period size: 15  Copynumber: 2.5  Consensus size: 15

                       *    
          1 GAAAAAAAAAGAAAAA
          1 GAAAAAAAAA-TAAAA

                        *  
         17 GAAAAAAAAATACAA
          1 GAAAAAAAAATAAAA

                    
         32 GAAAAAAA
          1 GAAAAAAA

         40 TTCAATTTTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   11  0.52
  16   10  0.48

ACGTcount: A:0.85, C:0.03, G:0.10, T:0.03


Consensus pattern (15 bp):   
GAAAAAAAAATAAAA
Done.