Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03930.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 889

Length: 1482
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Found at i:1449 original size:31 final size:31

Alignment explanation


    Indices: 1404--1463  Score: 95
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       1394 ATAACTTAAA

                                   *       
       1404 TAAATAAAATTTTTTAAATAATTTAATGATT
          1 TAAATAAAATTTTTTAAATAATTCAATGATT

                                          
       1435 TAAATGAAAA-TTTTTAAATAATTCAATGA
          1 TAAAT-AAAATTTTTTAAATAATTCAATGA

       1464 ATATTTTTCA


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  31   23  0.85
  32    4  0.15

ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43


Consensus pattern (31 bp):   
TAAATAAAATTTTTTAAATAATTCAATGATT

Found at i:1462 original size:22 final size:22

Alignment explanation


    Indices: 1437--1479  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1427 TAATGATTTA

                                   
       1437 AATGAAAATTTTT-AAATAATTC
          1 AATGAAAATTTTTCAAA-AATTC

                  *              
       1459 AATGAATATTTTTCAAAAATT
          1 AATGAAAATTTTTCAAAAATT

       1480 AAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  22   16  0.84
  23    3  0.16

ACGTcount: A:0.49, C:0.05, G:0.05, T:0.42


Consensus pattern (22 bp):   
AATGAAAATTTTTCAAAAATTC
Done.