Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03934.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 385

Length: 643
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26


Found at i:28 original size:13 final size:13

Alignment explanation


    Indices: 10--34  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

          1 AGCCAAGCG

                         
         10 GAAAAAAGAAAAC
          1 GAAAAAAGAAAAC

                        
         23 GAAAAAAGAAAA
          1 GAAAAAAGAAAA

         35 ATCAATAGCT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00


Consensus pattern (13 bp):   
GAAAAAAGAAAAC
Done.