Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03958.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5504
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:282 original size:27 final size:28

Alignment explanation


    Indices: 252--310  Score: 68
    Period size: 27  Copynumber: 2.2  Consensus size: 28

        242 AGAATAGGAA

                     *    *    *        
        252 GAAAAGAAAGAA-ATAAAATTGAAATAG
          1 GAAAAGAAAAAACAAAAAAGTGAAATAG

                                        
        279 G-AAAGAAAAAACAAAAAAGTGAAATAG
          1 GAAAAGAAAAAACAAAAAAGTGAAATAG

            *    
        306 AAAAA
          1 GAAAA

        311 TAGAAGGAGA


Statistics
Matches: 26,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  26    9  0.35
  27   14  0.54
  28    3  0.12

ACGTcount: A:0.71, C:0.02, G:0.17, T:0.10


Consensus pattern (28 bp):   
GAAAAGAAAAAACAAAAAAGTGAAATAG
Done.