Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03962.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18882
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33


Found at i:4599 original size:32 final size:32

Alignment explanation


    Indices: 4563--4742  Score: 243
    Period size: 32  Copynumber: 5.6  Consensus size: 32

       4553 TAAAAGGGTG

                            *               
       4563 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
          1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT

                            *           *   
       4595 ACACTTGAAAAGGAAACGTACACTTTGTATGT
          1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT

                        * **                
       4627 ACACTTGAAAAGTATTTGTACACTTTGTGTGT
          1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT

            *           *        *         *
       4659 GCACTTGAAAAGAAAATGTACCCTTTGTGTGC
          1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT

                                            
       4691 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
          1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT

                *         *     
       4723 ACCATTTGAAAAGGGAATGT
          1 A-CACTTGAAAAGGAAATGT

       4743 GCACCTCGGG


Statistics
Matches: 129,  Mismatches: 18, Indels: 1
        0.87            0.12        0.01

Matches are distributed among these distances:
  32  113  0.88
  33   16  0.12

ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31


Consensus pattern (32 bp):   
ACACTTGAAAAGGAAATGTACACTTTGTGTGT

Found at i:13225 original size:32 final size:32

Alignment explanation


    Indices: 13180--13309  Score: 161
    Period size: 32  Copynumber: 4.0  Consensus size: 32

      13170 CTGTACACTT

                 *                          
      13180 GAAAAGGTACACTTTGTGTGTACACTTGAAAA
          1 GAAAATGTACACTTTGTGTGTACACTTGAAAA

             * **                *          
      13212 GTATTTGTACACTTTGTGTGTGCACTTGAAAA
          1 GAAAATGTACACTTTGTGTGTACACTTGAAAA

                      *         *           
      13244 GAAAATGTACCCTTTGTGTGCACACTTGAAAA
          1 GAAAATGTACACTTTGTGTGTACACTTGAAAA

             *    *                  *       
      13276 GGAAATATACACTTTGTGTGTACCATTTGAAAA
          1 GAAAATGTACACTTTGTGTGTA-CACTTGAAAA

             
      13309 G
          1 G

      13310 GGAATGTGCA


Statistics
Matches: 81,  Mismatches: 16, Indels: 1
        0.83            0.16        0.01

Matches are distributed among these distances:
  32   71  0.88
  33   10  0.12

ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32


Consensus pattern (32 bp):   
GAAAATGTACACTTTGTGTGTACACTTGAAAA
Done.