Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga05g03968.N2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 598
Length: 997
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Found at i:920 original size:159 final size:159
Alignment explanation
Indices: 631--950 Score: 640
Period size: 159 Copynumber: 2.0 Consensus size: 159
621 GTGAAAAGTC
631 ATATGATTCTGCTCCACTTGACTAAAATAAATGTATGAGAAATACATAGGATTATATTATTAAAA
1 ATATGATTCTGCTCCACTTGACTAAAATAAATGTATGAGAAATACATAGGATTATATTATTAAAA
696 ATTAAAATTCTCATACTTGATCAATATTGTACTTTATCATTATACATATTAGAAATAAATATTAG
66 ATTAAAATTCTCATACTTGATCAATATTGTACTTTATCATTATACATATTAGAAATAAATATTAG
761 TTTCTTAGCTACAAAAAGGACACCAATAA
131 TTTCTTAGCTACAAAAAGGACACCAATAA
790 ATATGATTCTGCTCCACTTGACTAAAATAAATGTATGAGAAATACATAGGATTATATTATTAAAA
1 ATATGATTCTGCTCCACTTGACTAAAATAAATGTATGAGAAATACATAGGATTATATTATTAAAA
855 ATTAAAATTCTCATACTTGATCAATATTGTACTTTATCATTATACATATTAGAAATAAATATTAG
66 ATTAAAATTCTCATACTTGATCAATATTGTACTTTATCATTATACATATTAGAAATAAATATTAG
920 TTTCTTAGCTACAAAAAGGACACCAATAA
131 TTTCTTAGCTACAAAAAGGACACCAATAA
949 AT
1 AT
951 GTATCTACTC
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
159 161 1.00
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.35
Consensus pattern (159 bp):
ATATGATTCTGCTCCACTTGACTAAAATAAATGTATGAGAAATACATAGGATTATATTATTAAAA
ATTAAAATTCTCATACTTGATCAATATTGTACTTTATCATTATACATATTAGAAATAAATATTAG
TTTCTTAGCTACAAAAAGGACACCAATAA
Done.