Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03995.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 478

Length: 798
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.32


Found at i:270 original size:30 final size:30

Alignment explanation


    Indices: 156--261  Score: 176
    Period size: 30  Copynumber: 3.5  Consensus size: 30

        146 AAATCTCCTT

                                          
        156 CATCATCGCCTCCTGCGAGTTCTCCAACAA
          1 CATCATCGCCTCCTGCGAGTTCTCCAACAA

              *                           
        186 CAGCATCGCCTCCTGCGAGTTCTCCAACAA
          1 CATCATCGCCTCCTGCGAGTTCTCCAACAA

                         *             *  
        216 CATCATCGCCTCCCGCGAGTTCTCCAAAAA
          1 CATCATCGCCTCCTGCGAGTTCTCCAACAA

                      *     
        246 CATCATCGCCGCCTGC
          1 CATCATCGCCTCCTGC

        262 AAAATCTCCG


Statistics
Matches: 70,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  30   70  1.00

ACGTcount: A:0.23, C:0.42, G:0.15, T:0.21


Consensus pattern (30 bp):   
CATCATCGCCTCCTGCGAGTTCTCCAACAA

Done.