Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03998.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3567
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32


Found at i:840 original size:72 final size:72

Alignment explanation


    Indices: 743--1379  Score: 945
    Period size: 72  Copynumber: 8.8  Consensus size: 72

        733 TTGATTTGCC

                *    *                      *  *                             
        743 AAACTTCTTACAACTCACTCATTTAGACTTGTGGGGGAACCAATTGAGTGGACAAATTCCAAGAT
          1 AAACCTCTTGCAACTCACTCATTTAGACTTGTCGGAGAACCAATTGAGTGGACAAATTCCAAGAT

                   
        808 CATTGGG
         66 CATTGGG

                               *              * *                            
        815 AAACCTCTTGCAACTCACTTATTTAGACTTGTCGTATAACCAATTGAGTGGACAAATTCCAAGAT
          1 AAACCTCTTGCAACTCACTCATTTAGACTTGTCGGAGAACCAATTGAGTGGACAAATTCCAAGAT

                *  
        880 CATTAGG
         66 CATTGGG

                                *           *  *                             
        887 AAACCTCTTGCAACTCACTCTTTTAGACTTGTGGGGGAACCAATTGAGTGGACAAATTCCAAGAT
          1 AAACCTCTTGCAACTCACTCATTTAGACTTGTCGGAGAACCAATTGAGTGGACAAATTCCAAGAT

                   
        952 CATTGGG
         66 CATTGGG

                            *                   *                           *
        959 AAACCTCTTGCAACTCGCTCATTTAGACTTGT-GTGGGAACCAATTGAGTGGACAAATTCCAAGG
          1 AAACCTCTTGCAACTCACTCATTTAGACTTGTCG-GAGAACCAATTGAGTGGACAAATTCCAAGA

                    
       1023 TCATTGGG
         65 TCATTGGG

            *                                 *                            * 
       1031 GAACCTCTTGCAACTCACTCATTTAGACTTGTCGCAGAACCAATTGAGTGGACAAATTCCAAGGT
          1 AAACCTCTTGCAACTCACTCATTTAGACTTGTCGGAGAACCAATTGAGTGGACAAATTCCAAGAT

                   
       1096 CATTGGG
         66 CATTGGG

            *                                 *          *                   
       1103 GAACCTCTTGCAACTCACTCATTTAGACTTGTCGCAGAACCAATTTAGTGGACAAATTCCAAGAT
          1 AAACCTCTTGCAACTCACTCATTTAGACTTGTCGGAGAACCAATTGAGTGGACAAATTCCAAGAT

                   
       1168 CATTGGG
         66 CATTGGG

            *     *             *            *  *                            
       1175 GAACCTTTTGCAACTCACTCTTTTAGACTTGTCAGACAACCAATTGAGTGGACAAATTCCAAGAT
          1 AAACCTCTTGCAACTCACTCATTTAGACTTGTCGGAGAACCAATTGAGTGGACAAATTCCAAGAT

                   
       1240 CATTGGG
         66 CATTGGG

            *        *               *        *          *                   
       1247 GAACCTCTTACAACTCACTCATTTACACTTGTCGCAGAACCAATTAAGTGGACAAATTCCAAGAT
          1 AAACCTCTTGCAACTCACTCATTTAGACTTGTCGGAGAACCAATTGAGTGGACAAATTCCAAGAT

                    
       1312 CATTGGGG
         66 CATT-GGG

                               *     *      *                            
       1320 AAA-CTCTTGCAACTCACTTATTTATACTTGTGGGAGAACCAATTGAGTGGACAAATTCCA
          1 AAACCTCTTGCAACTCACTCATTTAGACTTGTCGGAGAACCAATTGAGTGGACAAATTCCA

       1380 TCGTCAATTC


Statistics
Matches: 517,  Mismatches: 45, Indels: 6
        0.91            0.08        0.01

Matches are distributed among these distances:
  71    1  0.00
  72  510  0.99
  73    6  0.01

ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28


Consensus pattern (72 bp):   
AAACCTCTTGCAACTCACTCATTTAGACTTGTCGGAGAACCAATTGAGTGGACAAATTCCAAGAT
CATTGGG

Done.