Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03999.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3440
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:2086 original size:30 final size:30

Alignment explanation


    Indices: 2052--2132  Score: 90
    Period size: 30  Copynumber: 2.7  Consensus size: 30

       2042 TGAGGAGTGG

                    *             *       
       2052 ATTCCTCCTCCACCTCCTGATACTGAACAA
          1 ATTCCTCCACCACCTCCTGATAATGAACAA

                 *     *              *   
       2082 ATTCCACCACCTCCTCCTGATAATGAGCAA
          1 ATTCCTCCACCACCTCCTGATAATGAACAA

            *       *     *      
       2112 GTTCCTCCCCCACCACCTGAT
          1 ATTCCTCCACCACCTCCTGAT

       2133 GAGCCTCCTG


Statistics
Matches: 41,  Mismatches: 10, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  30   41  1.00

ACGTcount: A:0.25, C:0.42, G:0.09, T:0.25


Consensus pattern (30 bp):   
ATTCCTCCACCACCTCCTGATAATGAACAA
Done.