Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g04008.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3555
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:3365 original size:34 final size:34

Alignment explanation


    Indices: 3327--3396  Score: 122
    Period size: 34  Copynumber: 2.1  Consensus size: 34

       3317 TTGGTTTGAC

                          *                   
       3327 TTGTTAGATATGTATGTGTCCGACATTGATATGT
          1 TTGTTAGATATGTAAGTGTCCGACATTGATATGT

                                    *         
       3361 TTGTTAGATATGTAAGTGTCCGACGTTGATATGT
          1 TTGTTAGATATGTAAGTGTCCGACATTGATATGT

              
       3395 TT
          1 TT

       3397 ATGTTCTTTT


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.23, C:0.09, G:0.24, T:0.44


Consensus pattern (34 bp):   
TTGTTAGATATGTAAGTGTCCGACATTGATATGT
Done.