Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g04008.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4301
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:4111 original size:34 final size:34

Alignment explanation


    Indices: 4073--4142  Score: 122
    Period size: 34  Copynumber: 2.1  Consensus size: 34

       4063 TTGGTTTGAC

                          *                   
       4073 TTGTTAGATATGTATGTGTCCGACATTGATATGT
          1 TTGTTAGATATGTAAGTGTCCGACATTGATATGT

                                    *         
       4107 TTGTTAGATATGTAAGTGTCCGACGTTGATATGT
          1 TTGTTAGATATGTAAGTGTCCGACATTGATATGT

              
       4141 TT
          1 TT

       4143 ATGTTCTTTT


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.23, C:0.09, G:0.24, T:0.44


Consensus pattern (34 bp):   
TTGTTAGATATGTAAGTGTCCGACATTGATATGT
Done.