Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g04022.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3309
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:214 original size:86 final size:81

Alignment explanation


    Indices: 72--240  Score: 248
    Period size: 86  Copynumber: 2.0  Consensus size: 81

         62 ATTTCGTCAA

                                   * *                                       
         72 AGCTTTGTAAGATAGTCAAGGGAGTGAAATTCACTGCTTCATTTTCAGCTCTAATCTCTCTAACA
          1 AGCTTTGTAAGATAGTCAAGGGACTCAAATTCACTGCTTCATTTTCAGCTCTAATCTCTC-AACA

                              
        137 CTTTTCAGCCACTAAGTC
         65 CTTTTCAGCCACT-AGTC

                                           *                   *             
        155 AGCTTTGTAAGATAGTCAAGGAAGAACTCAACTTCACTGCTTCATTTTCAGTTCTAATCTCTCAA
          1 AGCTTTGTAAGATAGTCAAGG--G-ACTCAAATTCACTGCTTCATTTTCAGCTCTAATCTCTCAA

                        *      
        220 CACTTTTCAGCCGCTAGTC
         63 CACTTTTCAGCCACTAGTC

              
        239 AG
          1 AG

        241 GGACATAGCA


Statistics
Matches: 78,  Mismatches: 5, Indels: 5
        0.89            0.06        0.06

Matches are distributed among these distances:
  83   21  0.27
  84    6  0.08
  85   17  0.22
  86   34  0.44

ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33


Consensus pattern (81 bp):   
AGCTTTGTAAGATAGTCAAGGGACTCAAATTCACTGCTTCATTTTCAGCTCTAATCTCTCAACAC
TTTTCAGCCACTAGTC
Done.