Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g04022.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3396
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:301 original size:86 final size:81

Alignment explanation


    Indices: 159--327  Score: 248
    Period size: 86  Copynumber: 2.0  Consensus size: 81

        149 ATTATCTGCT

                                   * *                                       
        159 AGCTTTGTAAGATAGTCAAGGGAGTGAAATTCACTGCTTCATTTTCAGCTCTAATCTCTCTAACA
          1 AGCTTTGTAAGATAGTCAAGGGACTCAAATTCACTGCTTCATTTTCAGCTCTAATCTCTC-AACA

                              
        224 CTTTTCAGCCACTAAGTC
         65 CTTTTCAGCCACT-AGTC

                                           *                   *             
        242 AGCTTTGTAAGATAGTCAAGGAAGAACTCAACTTCACTGCTTCATTTTCAGTTCTAATCTCTCAA
          1 AGCTTTGTAAGATAGTCAAGG--G-ACTCAAATTCACTGCTTCATTTTCAGCTCTAATCTCTCAA

                        *      
        307 CACTTTTCAGCCGCTAGTC
         63 CACTTTTCAGCCACTAGTC

              
        326 AG
          1 AG

        328 GGACATAGCA


Statistics
Matches: 78,  Mismatches: 5, Indels: 5
        0.89            0.06        0.06

Matches are distributed among these distances:
  83   21  0.27
  84    6  0.08
  85   17  0.22
  86   34  0.44

ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33


Consensus pattern (81 bp):   
AGCTTTGTAAGATAGTCAAGGGACTCAAATTCACTGCTTCATTTTCAGCTCTAATCTCTCAACAC
TTTTCAGCCACTAGTC
Done.