Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g04027.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3826
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29


Found at i:3724 original size:36 final size:36

Alignment explanation


    Indices: 3680--3759  Score: 151
    Period size: 36  Copynumber: 2.2  Consensus size: 36

       3670 AGCTTAGGAG

                                                
       3680 GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT
          1 GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT

                                                
       3716 GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT
          1 GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT

                    
       3752 GTTATGTT
          1 G-TATGTT

       3760 TCTTAAAAAT


Statistics
Matches: 43,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  36   37  0.86
  37    6  0.14

ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46


Consensus pattern (36 bp):   
GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT
Done.