Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g04031.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1862
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:106 original size:3 final size:3

Alignment explanation


    Indices: 98--133  Score: 72
    Period size: 3  Copynumber: 12.0  Consensus size: 3

         88 TTTCCTTCAT

                                                           
         98 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

        134 ATAATCTCAC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTC

Done.