Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga05g04038.N6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3278
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Found at i:3230 original size:201 final size:201
Alignment explanation
Indices: 2873--3276 Score: 639
Period size: 201 Copynumber: 2.0 Consensus size: 201
2863 GAAATTACTA
* **
2873 AGAATGACTCTAGTCTTTGTTGCTGCCCCAAATTGAGAATTCTTCAGATATGCCATTGCAAAAGT
1 AGAATGACTCTAGTCTTTGTTGCTACCCCAAATTGAGAATTCTTCAGATAAACCATTGCAAAAGT
* * *
2938 TTAAAATATGTTTGTGCAAACACTTCTGCTCAAGAGCTTCAATCATTGGAATCTATCACAATAAT
66 TTAAAATACGTTTGTGCAAACACTACTGCTCAAGAGCTGCAATCATTGGAATCTATCACAATAAT
*
3003 TGGTTGTCCTCAACTTATGCAAATCTTCAAGATGGAACAAAATGAGAATGGGCAAGATGTTGTGG
131 TGGTTGTCCTCAACTTATGCAAATCTTCAAGATGGAACAAAATGAGAATAGGCAAGATGTTGTGG
3068 TTCCTC
196 TTCCTC
* * * * * * *
3074 AGAATGGCTCTTGTCTTTGTTGCTATCCGAAATTGAGAATTCTTGAGATAAACCGTTGCGAAAGT
1 AGAATGACTCTAGTCTTTGTTGCTACCCCAAATTGAGAATTCTTCAGATAAACCATTGCAAAAGT
* *
3139 TTAAAATACGTTTGTGCAAACACTAC-GACTCAAGGGCTGCAATCATTGGAATCTGTCACAATAA
66 TTAAAATACGTTTGTGCAAACACTACTG-CTCAAGAGCTGCAATCATTGGAATCTATCACAATAA
*
3203 TTGGTTGTCCTCAACTTATGCAAATCTTCAAGATGGAACAAAATGAGCATAGGCAAGATGTTGTG
130 TTGGTTGTCCTCAACTTATGCAAATCTTCAAGATGGAACAAAATGAGAATAGGCAAGATGTTGTG
3268 GTTCCTC
195 GTTCCTC
3275 AG
1 AG
3277 GT
Statistics
Matches: 185, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
200 1 0.01
201 184 0.99
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (201 bp):
AGAATGACTCTAGTCTTTGTTGCTACCCCAAATTGAGAATTCTTCAGATAAACCATTGCAAAAGT
TTAAAATACGTTTGTGCAAACACTACTGCTCAAGAGCTGCAATCATTGGAATCTATCACAATAAT
TGGTTGTCCTCAACTTATGCAAATCTTCAAGATGGAACAAAATGAGAATAGGCAAGATGTTGTGG
TTCCTC
Done.