Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g04042.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 574

Length: 958
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28


Found at i:175 original size:46 final size:45

Alignment explanation


    Indices: 108--200  Score: 177
    Period size: 46  Copynumber: 2.0  Consensus size: 45

         98 TTTACACCCA

                                                          
        108 ACCCAACCAGAATTTGCAAAAATCTCCAAACCATTCTCAATTGCCC
          1 ACCCAACCAGAATTTGCAAAAATCTCCAAACC-TTCTCAATTGCCC

                                                         
        154 ACCCAACCAGAATTTGCAAAAATCTCCAAACCTTCTCAATTGCCC
          1 ACCCAACCAGAATTTGCAAAAATCTCCAAACCTTCTCAATTGCCC

              
        199 AC
          1 AC

        201 AATTCAGTGT


Statistics
Matches: 47,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  45   15  0.32
  46   32  0.68

ACGTcount: A:0.37, C:0.35, G:0.06, T:0.22


Consensus pattern (45 bp):   
ACCCAACCAGAATTTGCAAAAATCTCCAAACCTTCTCAATTGCCC

Found at i:269 original size:13 final size:13

Alignment explanation


    Indices: 251--276  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        241 AAACAAGAGC

                         
        251 AGAACACATCCAT
          1 AGAACACATCCAT

                         
        264 AGAACACATCCAT
          1 AGAACACATCCAT

        277 TCAAGTACTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15


Consensus pattern (13 bp):   
AGAACACATCCAT
Done.