Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00001.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7305
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37


Found at i:1378 original size:39 final size:39

Alignment explanation


    Indices: 1324--1406  Score: 132
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       1314 GGTGGTGACG

                                                *   
       1324 GGTGGACCGATGGTGACTA-CCTGACTGGTGAACGATGAT
          1 GGTGGACCGATGGTGAC-AGCCTGACTGGTGAACGACGAT

                     *                             
       1363 GGTGGACCGGTGGTGACAGCCTGACTGGTGAACGACGAT
          1 GGTGGACCGATGGTGACAGCCTGACTGGTGAACGACGAT

                 
       1402 GGTGG
          1 GGTGG

       1407 TGGCCAGTGG


Statistics
Matches: 41,  Mismatches: 2, Indels: 2
        0.91            0.04        0.04

Matches are distributed among these distances:
  38    1  0.02
  39   40  0.98

ACGTcount: A:0.20, C:0.18, G:0.41, T:0.20


Consensus pattern (39 bp):   
GGTGGACCGATGGTGACAGCCTGACTGGTGAACGACGAT

Found at i:3557 original size:31 final size:31

Alignment explanation


    Indices: 3521--3583  Score: 126
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       3511 TTCCTTATTT

                                           
       3521 CCTTTTTGTTTTCATTATTCTCTCTTCCTCC
          1 CCTTTTTGTTTTCATTATTCTCTCTTCCTCC

                                           
       3552 CCTTTTTGTTTTCATTATTCTCTCTTCCTCC
          1 CCTTTTTGTTTTCATTATTCTCTCTTCCTCC

             
       3583 C
          1 C

       3584 TTCTCGTACT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.06, C:0.33, G:0.03, T:0.57


Consensus pattern (31 bp):   
CCTTTTTGTTTTCATTATTCTCTCTTCCTCC
Done.