Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00005.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2996
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33


Found at i:179 original size:39 final size:39

Alignment explanation


    Indices: 125--207  Score: 132
    Period size: 39  Copynumber: 2.1  Consensus size: 39

        115 CCACTGGCCA

                    *                               
        125 CCACCATCGTCGTTCACCAGTCAGGCT-GTCACCACCGGT
          1 CCACCATCATCGTTCACCAGTCAGG-TAGTCACCACCGGT

                                              *    
        164 CCACCATCATCGTTCACCAGTCAGGTAGTCACCATCGGT
          1 CCACCATCATCGTTCACCAGTCAGGTAGTCACCACCGGT

                 
        203 CCACC
          1 CCACC

        208 CGTCACCACC


Statistics
Matches: 41,  Mismatches: 2, Indels: 2
        0.91            0.04        0.04

Matches are distributed among these distances:
  38    1  0.02
  39   40  0.98

ACGTcount: A:0.20, C:0.41, G:0.18, T:0.20


Consensus pattern (39 bp):   
CCACCATCATCGTTCACCAGTCAGGTAGTCACCACCGGT
Done.