Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00003.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4448
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:1682 original size:78 final size:78

Alignment explanation


    Indices: 1553--1703  Score: 214
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       1543 CTCATATTCT

                       *                      *                         *    
       1553 ACCATTAAACCGTGATCCCTTGATCTCACCAACTGGGAGAGTCGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCCTGATCCCTTGATCTCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC

              *          
       1618 ACTATGGAGTTCG
         66 ACCATGGAGTTCG

                                         *  *          *                *    
       1631 ACCATTAAACCCTGATCCCTTGAT-TGCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGAT
          1 ACCATTAAACCCTGATCCCTTGATCT-CACCAACTAGGAGAGTCGGTGATCATGTTGATAACGAT

                     
       1695 CACCATGGA
         65 CACCATGGA

       1704 CTTTGTGTAC


Statistics
Matches: 64,  Mismatches: 8, Indels: 2
        0.86            0.11        0.03

Matches are distributed among these distances:
  77    1  0.02
  78   63  0.98

ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28


Consensus pattern (78 bp):   
ACCATTAAACCCTGATCCCTTGATCTCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Done.