Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00009.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1412
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:199 original size:39 final size:40

Alignment explanation


    Indices: 156--232  Score: 102
    Period size: 39  Copynumber: 1.9  Consensus size: 40

        146 CCCCGTTGTT

                  *                                 
        156 GTTCACGGGTCAGGCAGTCACCACCGGTCCA-CCATCATC
          1 GTTCACCGGTCAGGCAGTCACCACCGGTCCACCCATCATC

                    *  *  *        *              
        195 GTTCACCGTTCGGGTAGTCACCATCGGTCCACCCATCA
          1 GTTCACCGGTCAGGCAGTCACCACCGGTCCACCCATCA

        233 ATCTCTTTCA


Statistics
Matches: 32,  Mismatches: 5, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  39   26  0.81
  40    6  0.19

ACGTcount: A:0.19, C:0.38, G:0.22, T:0.21


Consensus pattern (40 bp):   
GTTCACCGGTCAGGCAGTCACCACCGGTCCACCCATCATC
Done.