Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00009.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 893

Length: 1489
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33


Found at i:201 original size:12 final size:12

Alignment explanation


    Indices: 184--213  Score: 60
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        174 CAAATCTCCT

                        
        184 CCCATTTCTTTA
          1 CCCATTTCTTTA

                        
        196 CCCATTTCTTTA
          1 CCCATTTCTTTA

                  
        208 CCCATT
          1 CCCATT

        214 CTCTCTCTCG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.17, C:0.37, G:0.00, T:0.47


Consensus pattern (12 bp):   
CCCATTTCTTTA
Done.