Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00032.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2808
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27


Found at i:2593 original size:23 final size:23

Alignment explanation


    Indices: 2563--2610  Score: 96
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       2553 TGAGTTGTAG

                                   
       2563 ATTGCCTGAAACCTCGGGGATAT
          1 ATTGCCTGAAACCTCGGGGATAT

                                   
       2586 ATTGCCTGAAACCTCGGGGATAT
          1 ATTGCCTGAAACCTCGGGGATAT

              
       2609 AT
          1 AT

       2611 ACTCTTTGAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27


Consensus pattern (23 bp):   
ATTGCCTGAAACCTCGGGGATAT
Done.