Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00067.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4000
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27


Found at i:414 original size:45 final size:45

Alignment explanation


    Indices: 350--437  Score: 149
    Period size: 45  Copynumber: 2.0  Consensus size: 45

        340 CGCGAAAGAG

                   *              *      *               
        350 AAGGCTTCGAAGCAGAGGAAACGACGCGATTTCTGGTTCTAAGCA
          1 AAGGCTTAGAAGCAGAGGAAACAACGCGAATTCTGGTTCTAAGCA

                                                       
        395 AAGGCTTAGAAGCAGAGGAAACAACGCGAATTCTGGTTCTAAG
          1 AAGGCTTAGAAGCAGAGGAAACAACGCGAATTCTGGTTCTAAG

        438 GTGATTTCTC


Statistics
Matches: 40,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  45   40  1.00

ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19


Consensus pattern (45 bp):   
AAGGCTTAGAAGCAGAGGAAACAACGCGAATTCTGGTTCTAAGCA
Done.