Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00090.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 444

Length: 740
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33


Found at i:356 original size:9 final size:9

Alignment explanation


    Indices: 342--366  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        332 CTGCCTATTT

                     
        342 TCATCTTCA
          1 TCATCTTCA

                     
        351 TCATCTTCA
          1 TCATCTTCA

                   
        360 TCATCTT
          1 TCATCTT

        367 TGCTCTTTGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.20, C:0.32, G:0.00, T:0.48


Consensus pattern (9 bp):   
TCATCTTCA

Found at i:476 original size:36 final size:36

Alignment explanation


    Indices: 436--661  Score: 308
    Period size: 36  Copynumber: 6.1  Consensus size: 36

        426 ACAATGTTCG

                     *   *    *  *              
        436 ATCTTATCGGGGCTACTTTCCAGTCGATGATGTTGA
          1 ATCTTATCGAGGCGACTTCCCCGTCGATGATGTTGA

                                       *        
        472 ATCTTATCGAGGCGACTTCCCCGTCGACGATGTTGA
          1 ATCTTATCGAGGCGACTTCCCCGTCGATGATGTTGA

                    *                     *     
        508 ATCTTATCCAGGCGACTTCCCCGTCGATGACGTTGA
          1 ATCTTATCGAGGCGACTTCCCCGTCGATGATGTTGA

                        *                       
        544 ATCTTATCGAGGAGACTTCCCCGTCGATGATGTTGA
          1 ATCTTATCGAGGCGACTTCCCCGTCGATGATGTTGA

                                             *        
        580 ATCTTATCGAGGCGACTTCTCCGTCGACATCGACGATGTTGA
          1 ATCTTATCGAGGCGACTTC-CC--CG---TCGATGATGTTGA

                                       *        
        622 ATCTTATCGAGGCGACTTCCCCGTCGACGATGTTGA
          1 ATCTTATCGAGGCGACTTCCCCGTCGATGATGTTGA

                
        658 ATCT
          1 ATCT

        662 GTTCCTTCAC


Statistics
Matches: 171,  Mismatches: 13, Indels: 12
        0.87            0.07        0.06

Matches are distributed among these distances:
  36  132  0.77
  37    2  0.01
  39    4  0.02
  41    2  0.01
  42   31  0.18

ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30


Consensus pattern (36 bp):   
ATCTTATCGAGGCGACTTCCCCGTCGATGATGTTGA

Done.