Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00093.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1123
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:141 original size:15 final size:17

Alignment explanation


    Indices: 105--142  Score: 53
    Period size: 18  Copynumber: 2.3  Consensus size: 17

         95 TTTATTGCTC

                              
        105 TTTCATCAATGATCCACA
          1 TTTCATCAATGA-CCACA

                             
        123 TTTCATCAATG-CC-CA
          1 TTTCATCAATGACCACA

                 
        138 TTTCA
          1 TTTCA

        143 AAAACCATAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  15    7  0.35
  16    2  0.10
  18   11  0.55

ACGTcount: A:0.29, C:0.29, G:0.05, T:0.37


Consensus pattern (17 bp):   
TTTCATCAATGACCACA
Done.