Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00142.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 364

Length: 608
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Found at i:379 original size:78 final size:78

Alignment explanation


    Indices: 243--393  Score: 275
    Period size: 78  Copynumber: 1.9  Consensus size: 78

        233 CCAAAGTGTG

                                                                 *           
        243 GATGGGCCAACTTCTGGCTTAGCTGATGAGATTGCAGCTACTCCAGAATCGGATGTAGAAGTTGC
          1 GATGGGCCAACTTCTGGCTTAGCTGATGAGATTGCAGCTACTCCAGAATCGGAAGTAGAAGTTGC

                         
        308 TACTGAATATGCC
         66 TACTGAATATGCC

                                                   *          *              
        321 GATGGGCCAACTTCTGGCTTAGCTGATGAGATTGCAGCTTCTCCAGAATCTGAAGTAGAAGTTGC
          1 GATGGGCCAACTTCTGGCTTAGCTGATGAGATTGCAGCTACTCCAGAATCGGAAGTAGAAGTTGC

                    
        386 TACTGAAT
         66 TACTGAAT

        394 CTATTGGCGG


Statistics
Matches: 70,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  78   70  1.00

ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28


Consensus pattern (78 bp):   
GATGGGCCAACTTCTGGCTTAGCTGATGAGATTGCAGCTACTCCAGAATCGGAAGTAGAAGTTGC
TACTGAATATGCC
Done.