Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00110.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2561
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39


Found at i:1444 original size:33 final size:32

Alignment explanation


    Indices: 1389--1456  Score: 86
    Period size: 33  Copynumber: 2.1  Consensus size: 32

       1379 AATTGATTTA

                *                             
       1389 TTTACATTTTAGATTTTGTTTTTCAGATGAGT-T
          1 TTTAAATTTTAGATTTTGTTTTT-AGA-GAGTAT

                                             
       1422 TTTAAATTTTATGATTTT-TTTTTAGAGAGTAT
          1 TTTAAATTTTA-GATTTTGTTTTTAGAGAGTAT

               
       1454 TTT
          1 TTT

       1457 CCTTCCTCAA


Statistics
Matches: 32,  Mismatches: 1, Indels: 5
        0.84            0.03        0.13

Matches are distributed among these distances:
  31    4  0.12
  32    7  0.22
  33   15  0.47
  34    6  0.19

ACGTcount: A:0.24, C:0.03, G:0.13, T:0.60


Consensus pattern (32 bp):   
TTTAAATTTTAGATTTTGTTTTTAGAGAGTAT

Found at i:2080 original size:20 final size:20

Alignment explanation


    Indices: 2055--2094  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       2045 CTCGAAATAT

                                
       2055 CGGAGACTAATGGAGTTTAC
          1 CGGAGACTAATGGAGTTTAC

                                
       2075 CGGAGACTAATGGAGTTTAC
          1 CGGAGACTAATGGAGTTTAC

       2095 GACATACTAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25


Consensus pattern (20 bp):   
CGGAGACTAATGGAGTTTAC
Done.