Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00117.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1733
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:77 original size:21 final size:21

Alignment explanation


    Indices: 37--84  Score: 55
    Period size: 22  Copynumber: 2.3  Consensus size: 21

         27 CTCTCTGAAT

                           *     
         37 AAAAATTAAATAAATCCCCA-
          1 AAAAATTAAATAAATACCCAG

                                   
         57 AAAAATTAAAAATAAA-ACCCAG
          1 AAAAATT--AAATAAATACCCAG

                  
         79 AAAAAT
          1 AAAAAT

         85 AGTAGCTTAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  20    7  0.29
  21    4  0.17
  22   13  0.54

ACGTcount: A:0.67, C:0.15, G:0.02, T:0.17


Consensus pattern (21 bp):   
AAAAATTAAATAAATACCCAG

Done.