Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00120.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2136
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32


Found at i:1769 original size:40 final size:40

Alignment explanation


    Indices: 1699--1775  Score: 129
    Period size: 40  Copynumber: 1.9  Consensus size: 40

       1689 ATATATGCAT

                                                     
       1699 GCATGCCACTTTTTTACATTTTTGTCTTAATATGTATACAC
          1 GCATGCCACTTTTTTACA-TTTTGTCTTAATATGTATACAC

                                                 
       1740 GCATGCCACTCTTTTTACA-TTTGTCTTAATATGTAT
          1 GCATGCCACT-TTTTTACATTTTGTCTTAATATGTAT

       1776 GCATGTATGC


Statistics
Matches: 35,  Mismatches: 0, Indels: 3
        0.92            0.00        0.08

Matches are distributed among these distances:
  40   17  0.49
  41   10  0.29
  42    8  0.23

ACGTcount: A:0.23, C:0.19, G:0.10, T:0.47


Consensus pattern (40 bp):   
GCATGCCACTTTTTTACATTTTGTCTTAATATGTATACAC
Done.