Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00122.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 906

Length: 1511
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30


Found at i:1187 original size:3 final size:3

Alignment explanation


    Indices: 1179--1203  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       1169 GATGAAGGTC

                                             
       1179 CAT CAT CAT CAT CAT CAT CAT CAT C
          1 CAT CAT CAT CAT CAT CAT CAT CAT C

       1204 TGTTAAACCG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32


Consensus pattern (3 bp):   
CAT

Done.