Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00140.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4188
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:1538 original size:19 final size:20

Alignment explanation


    Indices: 1514--1561  Score: 55
    Period size: 19  Copynumber: 2.5  Consensus size: 20

       1504 GAATTAAGTC

                                
       1514 AATTAAATT-ATACAAATTT
          1 AATTAAATTAATACAAATTT

                        *   *   
       1533 AATT-AATTAATTCAATTTT
          1 AATTAAATTAATACAAATTT

                      
       1552 AATTGAAATT
          1 AATT-AAATT

       1562 TGTTTGGACT


Statistics
Matches: 24,  Mismatches: 2, Indels: 4
        0.80            0.07        0.13

Matches are distributed among these distances:
  18    4  0.17
  19   16  0.67
  21    4  0.17

ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46


Consensus pattern (20 bp):   
AATTAAATTAATACAAATTT
Done.