Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00147.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1670
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28


Found at i:713 original size:13 final size:13

Alignment explanation


    Indices: 695--722  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        685 AACCGTGGAA

                         
        695 TGGAAGAATTTGG
          1 TGGAAGAATTTGG

                         
        708 TGGAAGAATTTGG
          1 TGGAAGAATTTGG

              
        721 TG
          1 TG

        723 CACGAATTCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.29, C:0.00, G:0.39, T:0.32


Consensus pattern (13 bp):   
TGGAAGAATTTGG
Done.