Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00166.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 270

Length: 450
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.42


Found at i:365 original size:23 final size:22

Alignment explanation


    Indices: 339--381  Score: 59
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        329 TAATTTAGGT

                        *          
        339 ATATTTCATATTTTTTTAAAAAA
          1 ATATTT-ATATTATTTTAAAAAA

                  *             
        362 ATATTTTTATTATTTTAAAA
          1 ATATTTATATTATTTTAAAA

        382 TTATTTATTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  22   12  0.67
  23    6  0.33

ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56


Consensus pattern (22 bp):   
ATATTTATATTATTTTAAAAAA
Done.