Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00174.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36


Found at i:325 original size:134 final size:137

Alignment explanation


    Indices: 82--340  Score: 452
    Period size: 134  Copynumber: 1.9  Consensus size: 137

         72 GCGCCAATCG

                                               *                             
         82 CATTTCAATGGCGCTACTTTCTCCTCTTCCTCCGCGGTGTTCTTCTTCTCCTCGACGGCAACTCC
          1 CATTTCAATGGCGCTACTTTCTCCTCTTCCTCCGCCGTGTTCTTCTTCTCCTCGACGGCAACTCC

                                                                             
        147 ACACTTCACGGCCGATCTCTTTCTCTCCTTCCATGATAGGATCTCCTTCGCCCTCGTCTTATTCG
         66 ACACTTCACGGCCGATCTCTTTCTCTCCTTCCATGATAGGATCTCCTTCGCCCTCGTCTTATTCG

                   
        212 ATCTATA
        131 ATCTATA

                                                                  *          
        219 CATTTCAATGGCGCTACTTTCTCCTCTTCCTCCGCCGTGTTCTTC-T-T-CTCGGCGGCAACTCC
          1 CATTTCAATGGCGCTACTTTCTCCTCTTCCTCCGCCGTGTTCTTCTTCTCCTCGACGGCAACTCC

                        *                        *              *       
        281 ACACTTCACGGCTGATCTCTTTCTCTCCTTCCATGATCGGATCTCCTTCGCCTTCGTCTT
         66 ACACTTCACGGCCGATCTCTTTCTCTCCTTCCATGATAGGATCTCCTTCGCCCTCGTCTT

        341 CGTCAATCTT


Statistics
Matches: 117,  Mismatches: 5, Indels: 3
        0.94            0.04        0.02

Matches are distributed among these distances:
 134   71  0.61
 135    1  0.01
 136    1  0.01
 137   44  0.38

ACGTcount: A:0.12, C:0.37, G:0.14, T:0.36


Consensus pattern (137 bp):   
CATTTCAATGGCGCTACTTTCTCCTCTTCCTCCGCCGTGTTCTTCTTCTCCTCGACGGCAACTCC
ACACTTCACGGCCGATCTCTTTCTCTCCTTCCATGATAGGATCTCCTTCGCCCTCGTCTTATTCG
ATCTATA
Done.