Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00184.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 515

Length: 859
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:392 original size:19 final size:19

Alignment explanation


    Indices: 347--405  Score: 82
    Period size: 19  Copynumber: 3.1  Consensus size: 19

        337 ATATTGACGG

                               *
        347 CGAATTTTGACGGAAAATGG
          1 CGAATTTTGACGGAAAAT-A

            *         *        
        367 TGAATTTTGATGGAAAATA
          1 CGAATTTTGACGGAAAATA

                               
        386 CGAATTTTGACGGAAAATA
          1 CGAATTTTGACGGAAAATA

             
        405 C
          1 C

        406 TTCAAACGAA


Statistics
Matches: 34,  Mismatches: 5, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  19   18  0.53
  20   16  0.47

ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29


Consensus pattern (19 bp):   
CGAATTTTGACGGAAAATA
Done.