Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00185.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3848
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:362 original size:18 final size:16

Alignment explanation


    Indices: 317--363  Score: 58
    Period size: 16  Copynumber: 2.8  Consensus size: 16

        307 CATTGTTATT

                     *      
        317 GCTCTCTTTGTTCTTC
          1 GCTCTCTTTATTCTTC

             *              
        333 GTTCTCTTTATTCTTC
          1 GCTCTCTTTATTCTTC

                           
        349 GCTCTACATTTATTC
          1 GCTCT-C-TTTATTC

        364 AAATAAAGAT


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  16   18  0.69
  17    1  0.04
  18    7  0.27

ACGTcount: A:0.09, C:0.28, G:0.09, T:0.55


Consensus pattern (16 bp):   
GCTCTCTTTATTCTTC
Done.