Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00192.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 428

Length: 714
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32


Found at i:622 original size:48 final size:48

Alignment explanation


    Indices: 519--614  Score: 192
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        509 CCAATGTGGG

                                                            
        519 ATCTAAGCTTTTCTTTTCTTTCCTTAACAAATATTCACAAGTGGCTTA
          1 ATCTAAGCTTTTCTTTTCTTTCCTTAACAAATATTCACAAGTGGCTTA

                                                            
        567 ATCTAAGCTTTTCTTTTCTTTCCTTAACAAATATTCACAAGTGGCTTA
          1 ATCTAAGCTTTTCTTTTCTTTCCTTAACAAATATTCACAAGTGGCTTA

        615 CTTTAAGCAT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   48  1.00

ACGTcount: A:0.27, C:0.21, G:0.08, T:0.44


Consensus pattern (48 bp):   
ATCTAAGCTTTTCTTTTCTTTCCTTAACAAATATTCACAAGTGGCTTA
Done.