Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00200.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3954
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36


Found at i:403 original size:15 final size:14

Alignment explanation


    Indices: 385--418  Score: 50
    Period size: 15  Copynumber: 2.4  Consensus size: 14

        375 TTCCTCAAAG

                      *    
        385 TTTTGATTTTTATGT
          1 TTTTGATTTTGAT-T

                          
        400 TTTTGATTTTGATT
          1 TTTTGATTTTGATT

                 
        414 TTTTG
          1 TTTTG

        419 TTGTGTTTTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14    6  0.33
  15   12  0.67

ACGTcount: A:0.12, C:0.00, G:0.15, T:0.74


Consensus pattern (14 bp):   
TTTTGATTTTGATT
Done.