Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00230.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 348

Length: 580
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:214 original size:18 final size:18

Alignment explanation


    Indices: 191--249  Score: 75
    Period size: 18  Copynumber: 3.3  Consensus size: 18

        181 CTTCAATGGG

                               
        191 TTTGGTGTTGGCAT-TGGT
          1 TTTGGTGTTGG-ATGTGGT

                       *      
        209 TTTGGTGTTGGGTGTGGT
          1 TTTGGTGTTGGATGTGGT

                 *        *   
        227 TTTGGAGTTGGATGGGGT
          1 TTTGGTGTTGGATGTGGT

                 
        245 TTTGG
          1 TTTGG

        250 AGGTATGCCT


Statistics
Matches: 36,  Mismatches: 4, Indels: 2
        0.86            0.10        0.05

Matches are distributed among these distances:
  17    1  0.03
  18   35  0.97

ACGTcount: A:0.05, C:0.02, G:0.46, T:0.47


Consensus pattern (18 bp):   
TTTGGTGTTGGATGTGGT

Done.